Hi Nelson,
I assume that this is the Damen, in which case I'd suggest that you're starting in the wrong place, i.e. the middle. Personally, I'd fit the Kort pointy shafts and nozzles in place so that the props, shafts and motors line up and then worry about the hole in the ply. You can always enlarge that, juggle the shaft tube with wedges, bits of cardboard, whatever and only lock the shaft tube in place with a bit of fibreglass once you get a smooth system. To be honest, with a 6" shaft you don't really need it but...........
Have fun,
TonyH