The 6 volt battery will supply less current than the 7.2 volt one. If they were both the same capacity, this would cause a longer run time. As it is, the 7.2 volt pack has less capacity, so will not last as long anyway.
Regard the capacity (in Amp-Hours) figure as water in a bucket, regard the current as the rate of flow of water through a hole in the bottom of the bucket. Then imagine a slightly larger hole in the 7.2 volt bucket. Which will empty fastest? The bucket with the least water and the biggest hole.