You can still use empirical methods to size your tank without breaking out the pocket calculator- trying to calculate the tank volume for a wet hulled Type VII isn't my idea of fun, and you would still have to add in a large 'fudge factor'.
The best and easiest way, is to submerge the boat in test tank add polystyrene foam below the waterline until the boat is neutrally bouyant, or until say just the top of the periscope is above the surface. Now add more blocks of foam below the waterline until the boat reaches the desired waterline.
Once your goal is achieved, calculate the volume of the blocks you had to add to go from submerged trim to full waterline- that is your ballast tank volume, add 10-15% if you want a bit of extra weight to go fully negative (e.g. bottom your boat).
Andy