Be careful running lipos with an mtroniks esc- they're not configured for use with these batteries. If you run the cells in the pack below 3 volts per cell, you will knacker them. That's not to say you can't use them, but time your runs, or quit running as soon as the boat is showing a drop off in speed.
Brushed controllers designed for use with lipo are thin on the ground, just about all brushless controllers are designed for use with lipo, and will soften or shut off the power once the voltage drops below a preset voltage (this is usually programmable for different pack configurations).
As you have two lipo packs the simple idea would be to trim each pack down to two cells and make up a third pack with the remaing cells. Question is, does your charger support baalnced charging of two cell packs? Running a speed 400 motor on 11.1 volts at any sort of load will give it a rather short life span.