Hi ya Steven
Three questions
are you following instructions of the book
or - the article on here?
1. The shaft length that you mention seem to correspond to the same shaft length that I used.
2. What type of coupling are you using?
3. How are you going to mount the motor?
If you are following Glynn Guest's build, you are going to require a longer prop shaft and a solid coupling.
If you are following the build I did, you will need to cut part of the keel away further and part of the bottom support to accommodate the coupling I used. Also, you will need to mount the motor upside down which I did - because of the space you will require.
Here is a picture for you.