I'm wondering about the voltage because if the Lipo is higher, the regulator circuit (chopper) could be transmitting interference... Malc, where are you?!?
Does using a LiPo pack in another TX cause the problem to happen there? More specifically, the same pack. Since its known that the problem came with the use of the pack in a particular TX, the culprit has to be one or the other, just a question of figuring out why to either end or avoid the problem in future. Manufacturers have been shy about explaining how these things work, so theres some guesswork involved.
They use cellphone technology, so its a fair bet that the signals are encoded values transmitted with an address code. If a particular TX in a group is chucking out a stronger signal, it
might swamp out bits of its neighbours signals in short bursts for long enough to be seen as a glitch. Simplest test for this would be to wander off a way and see if the glitching reduces.
It could be that this one particular TX has a regulator that behaves differently when presented with a battery that can deliver more current.
Just groping, guessing and thinking aloud.