The only time I have had problems with epoxy glue causing paint to discolour is when I ventured in to my local "poundland" and tried their stuff. Ok,its cheap, but it does not like water and degrades rapidly to the point of crumbling to bits, but it also give an early sign of failing by going yellow in colour, this also then reacts with its paint coating and "tints" this too.
If it turns out to be a simple lack of sufficient primer base, to prevent any colour from bleeding through, try a spray can of "sanding sealer", or "barrier coat", give it a couple of coats, and sand smooth, but make sure you dont sand "through" this barrier layer, or where you did, will bleed through again later on. this stuff is also good for overcoating any paint you are unsure of its content, for example, overpainting enamel or oil based paint with cellulose , it prevents the thinners from reactivating the underlying paint.