Most small craft have relatively "sharp" propshaft angles nesessary for the practical design -it's only when it comes to models we wax lyrical about theory. There's not really any secrets behind it -look at the fairey owners club sites for example (people don't mention or quote it it much but talk allot about the boats). Full-scale you're trying to hide a big engine and gearbox amongst a practical working inside, not the same as in a model -duuh!
Personally I find it more intriguing why propshafts are fitted on models with no outer support whether it is a P or A bracket, even a skeg. It makes little difference for me except when I see a small shaft poking out completely unsupported which is just wrong in so many respects.
the big petrol boats have the rudder off to one side and some of the faster ones have only one blade of the propellor in the water
...I think you're getting mixed up with full-on racing craft (big and small-scale). These tend to have very shallow prop shaft angles and typically very shallow exits after the stern with surface peircing / cleaver props which as you say are designed (in real life) to actually have only a few square inches of the prop in the water at a time and the prop iself is designed to lift the back of the boat out of the water as well as the hydrodynamic effect of the hull. There is no room for a rudder here and on a single screw boat, it's often off-set to the side, particularly with boats designed to be optmised for one turn direction only, which might have a turn fin up font anyway. This isn't the case for the likes of the boats we are discussing here. As far as I can tell anyway no 30' odd deep vee boat design was fitted with a V12 supercharged lamborghini engine and fired towards a marker buoy in calm water with a surface drive set-up hoping to achieve 150mph+?
I'm leaving this comment with a video link I think most of us know who like fairey boats, but I still like watching it again every now and again. This is why we build the little ones really, it would take an awfully big lottery win to fully enjoy one full-scale these days...
https://youtu.be/PoU1CdobKIE