First of all, I did not know that you had been using 3S lipo for this motor!!..though I do not know the specifications of the motor.
I have ever burnt my Mabuchi 540 RS with 3S lipo installed in my Jupiter P-550 and thence I have switched the battery to 2S lipo for 540 class motor up to today. My PT-109 is using 2S lipo.
Apart from the above, here are my setup of the successful example of my PT-109 just for your information.
1;Motors...Mabuchi 540 low cost motors( around less than USD 10?) Yours looks expensive and gorgeous from its appearance.??!!
2;Battery...2S lipo 5000mAh
3;ESC ..nearly the same as yours
4;Props..plastic-made 3 bladed 35mm dia.which is sooo lightweight and cheap against your gorgeous brass prop.
See the pic below.
5;Prop shaft , stern tube...as per the kit original.
6:Couplings ..so called engineering plastics-made which is tough and calm as heard ? in the video posted a few days ago.
7:Alignment between two shafts of motor and prop is nearly perfect.
8;Water-cooling was properly done which I think is so important even if proprely done in every aspect of setting.
Without this water-cooling, my PT boat will possibly result in the over heat or stop on the water after/during continuous high speed run as in the video and pic4.
Needless to say, a slow moving PTB and/or scale ships does not possibly need such a system at all.!!
9;Grease was filled in the stern tubes fully in the beginning through the filling posts of stern tubes.
Pic1;Props used in my boat.... so low cost like the motor which will do sufficiently for this class of pla-model boat.!!
Pics 2/3...clearance between the motor and deck is narrow as the same as yours.
Pic4;Under high speed silent steering to port !