The rate of charge (and discharge) is measured in Amps. The amount of electricity held is measured in Amp-hours.
Your 3500 mAH battery can in theory* supply 3.5 amp for one hour, or 1 amp for 3.5 hours.
Charging it, in theory, if you offered it 3 amps for 1 and a bit hours, it would be fully charged from empty. The battery probably has or had a label saying that the charge should be 350 mA for 16 hours, or something similar.
Any time that a battery is charged or discharged, a chemical reaction is happening. Most reactions involve heat, either applied, or generated. Batteries generate heat when either charging or discharging. Doing either fast generates heat fast, if the heat is generated too fast, the battery cannot get rid of the heat and the temperature rises beyond the point that it will stay in one piece. (Been there, done it).
If a battery is charged fast, with or without an automatic charger, it will be warm at the end of the charge, and must be allowed time to cool before being heated further by a fast discharge..
* In theory, there is no difference between theory and practice. In practice, there is.