Tony, do you have an ammeter?
If it's a digital meter, you need to connect its red lead to the 6v battery positive terminal, then connect its black lead to the positive terminal at the motor. Now connect the battery negative terminal to the negative terminal on the motor.
Making sense so far?
Make sure that your meter is set to the Amps range, then pop the model in a tub of water and, while the motor/propellor is spinning, take a note of the meter reading. Let's assume that your particular setup is pulling 5 amps with the motor under load. All you need do is to remove the two ammeter leads and stick the 5A fuse in place of. As a rule-of-thumb, you might want to opt for a slightly higher value, say 6amps, or even 7.5amps.
A picture says it far better than I can, so you might want to point your browser here...
http://www.action-electronics.co.uk/home.htmlClick 'Diagrams and Articles', followed by 'Wiring Diagrams', then select any of the links. From within you should be able to glean the needful.
Good luck.
Incidentally, if your ammeter is of the analogue flavour, then you'll likely need to reverse the red/black leads.