Dave Milbourn's instructions are pretty explicit for this kit, and the preceding Huntsman. The CNC parts are very precisely cut and accurate so if they do not appear to fit then stop, think and have another look at the instructions and photos. The parts do fit, but there is no leeway to 'bodge' things as you might do with a more traditional kit.
Also, make sure you have got the skin sections the right way round! This nearly caught me out as the surface finish/colour on mine was slightly different from one side to the other and I assumed that the same finish would be facing outwards on all sections. This wasn't the case on one of my kits. It doesn't matter though as you still have to fill in the grain and cover with glass cloth whichever surface is facing outwards.
So try the middle and back sections back to front and turn them over until you get the right fit. Tape them all in place to be sure before reaching for the glue.
And, as Chris says, check the instructions re bevelling the keel and chine rails.
Colin